Publications

Books

  1. Ahmed Z, Liang BT. (2020). Systematically Dealing Practical Issues Associated to Healthcare Data Analytics. Lecture Notes in Networks and Systems, vol. 69, Print ISBN 978-3-030-12387-1, Online ISBN 978-3-030-12388-8. (Springer Nature)

  2. Ahmed Z, Pranulis J, Saman Z, Ngan CY. (2020). Bioinformatics Tools for PacBio Sequenced Amplicon Data Pre-Processing and Target Sequence Extraction. Lecture Notes in Networks and Systems, vol. 70, Print ISBN 978-3-030-12384-0, Online ISBN 978-3-030-12385-7. (Springer Nature)

  3. Neuberger A, Ahmed Z, Dandekar T. (2020). IntelliEppi: Intelligent reaction monitoring and holistic data management system for the molecular biology lab. Lecture Notes in Networks and Systems, vol. 69, Print ISBN 978-3-030-12387-1, Online ISBN 978-3-030-12388-8. (Springer Nature) [Joint first author]

  4. Ahmed Z, Saman M. (2013). Measurement, Analysis with Visualization for better Reliability. Artificial Intelligence and Hybrid Systems, Chapter 4, ISBN: 978-14775547-3-9. (iConcept Press Ltd. Pub.)

  5. Ahmed Z. (2013). Bioinformatics Software for Metabolic and Health Care Data Management: Software Analysis, Design and Development towards MFA, HCDM and MIDA. Scholars Press. ISBN: 978-3-639-51152-9, Germany.

  6. Ahmed Z. (2011). I-HMI and LT-SOS in PDM Systems: Implementing AI Concepts for The Advancement of Multiple Role Based User Oriented Product Data Management Systems. M Verlag Dr. Muller Publishing, ISBN: 9783639310702, Germany.

  7. Ahmed Z. (2011). Integration of Variants Handling in M-System NT: Empirically evaluated approach towards the identification of correlation between Traditional and Product Line measures. VDM Verlag Dr. Muller Publishing, ISBN: 9783639325539, Germany.

  8. Ahmed Z, Ali M. (2011). Smart House: Artificially Intelligent Home Automation System. VDM Verlag Dr. Muller Publishing, ISBN: 978-3-639-32410-5, Germany.

  9. Ahmed Z. (2010). Contributions to advance Product Data Management Systems - PDMs: Towards Flexible Graphical User Interface and Semantic Oriented Search for Web based PDMs. ISBN-13: 978-3838324951, ACM, Germany.

  10. Ahmed Z. (2010). Variant Handling using ZAC: Variability Analysis of Product Line Architectures developed in C/C++. LAP Lambert Academic Publishing, ISBN: 9783838341033, 2010, Germany.

  11. Ahmed Z. (2010). Ele-Comp-Hus: Digitally Mobile and Computerized House. LAP Lambert Academic Publishing, ISBN: 9783838352091, Germany.

  12. Tacheva I, and Ahmed Z. (2010) Integration of NLP Search with I-SOAS: Construction of Natural Language based Grammar and Mapping with Ontologies. LAP Lambert Academic Publishing. ISBN: 978-3-8433-5851-4, Germany.

  13. Ahmed Z. (2007). Measurement Analysis and Fault Proneness Indication in Product Line Applications (PLA). Frontiers in Artificial Intelligence and Applications, ISBN: 978-1-58603-794-9, IOS Press. In ACM Guide to Computing Literature.

Journal Articles

  1. Ahmed, Z. (2021). Intelligent health system for investigation and consenting COVID-19 patients and precision medicine. Personalized Medicine. [Online ahead of print]. PMID: 34619976

  2. Ahmed, Z., Renart., E., Mishra, D., & Zeeshan, S. (2021). JWES: A new pipeline for whole genome/exome sequence data processing, management, and gene-variant discovery, annotation, prediction, and genotyping. FEBS Open Bio. PMID: 34370400. (Wiley, Federation of European Biochemical Societies)

  3. Ahmed, Z., Renart., E., & Zeeshan, S.(2021). Genomics pipelines to investigate susceptibility in whole genome and exome sequenced data for variant discovery, annotation, prediction, and genotyping. PeerJ Life and Environment. 9:e11724. PMID: 34395068. (PeerJ)

  4. Ahmed, Z., Renart, E. G., Zeeshan, S., & Dong, X. (2021). Advancing clinical genomics and precision medicine with GVViZ: FAIR bioinformatics platform for variable gene-disease annotation, visualization, and expression analysis. Human Genomics. 15(1), 37. PMID: 34174938. (BMC, Springer Nature, Human Genome Organization)

  5. Ahmed, Z., Zeeshan, S., Foran, D. J., Kleinman, L. C., Wondisford, F. E., & Dong, XQ. (2021). Integrative Clinical, Genomics and Metabolomics Data Analysis for Mainstream Precision Medicine to Investigate COVID-19. BMJ Innovations. 7, 6-10. (BMJ)

  6. Ahmed, Z., Zeeshan, S., Mendhe, D., & Dong, X. (2020). Human gene and disease associations for clinical-genomics and precision medicine research. Clinical and Translational Medicine. 10(1), 297–318. PMID: 32508008. (Wiley)

  7. Ahmed, Z., Mohamed, K., Zeeshan, S., & Dong, X. (2020). Artificial intelligence with multi-functional machine learning platform development for better healthcare and precision medicine. Database : the journal of biological databases and curation, 2020, baaa010. PMID: 32185396. (Oxford)

  8. Ahmed, Z. (2020). Practicing precision medicine with intelligently integrative clinical and multi-omics data analysis. Human Genomics. 14(1), 35. PMID: 33008459. (BMC, Springer Nature)

  9. Zeeshan, S., Xiong, R., Liang, B. T., & Ahmed, Z. (2020). 100 Years of evolving gene-disease complexities and scientific debutants. Briefings in Bioinformatics. 21(3), 885–905. PMID: 30972412. (Oxford)

  10. Ahmed, Z., Zeeshan, S., Xiong, R., & Liang, B. T. (2019). Debutant iOS app and gene-disease complexities in clinical genomics and precision medicine. Clinical and Translational medicine. 8(1), 26. PMID: 31586224. (Wiley)

  11. Ahmed, Z., Kim, M., & Liang, B. T. (2018). MAV-clic: management, analysis, and visualization of clinical data. JAMIA open. 2(1), 23–28. PMID: 31984341. (Oxford & American Medical Informatics Association)

  12. Ahmed, Z., & Dandekar, T. (2018). MSL: Facilitating automatic and physical analysis of published sci-entific literature in PDF format. F1000Research. 4, 1453. PMID: 29721305.

  13. Ahmed, Z., & Ucar, D. (2017). I-ATAC: Interactive pipeline tool for the management and pre-processing of ATAC-seq samples. PeerJ, 5:e4040. PMID: 29181276. (PeerJ)

  14. Ahmed, Z. (2016). MAV-seq: Platform for the NGS Data Workflow Management and Automation. Frontiers in Neuroinformatics, Frontiers Publishers & in the proceedings of the Neuroinformatics Congress (INCF). 

  15. Ahmed Z. (2016). Interactive Quality and Pre-Processing Pipeline for ATAC-seq Data. Frontiers in Neuroinformatics, Frontiers Publishers & in the proceedings of the Neuroinformatics Congress (INCF). 

  16. Ahmed, Z., Saman, Z., Dandekar, T. (2016). MSL: Mining published scientific literature for the extraction and classification of text and images to support IR capabilities. Frontiers in Neuroinformatics, Frontiers Publishers & in the proceedings of the Neuroinformatics Congress (INCF). 

  17. Ahmed, Z., Saman, Z., & Dandekar, T. (2016). Mining Biomedical Images towards Valuable Information Retrieval in Biomedical and Life Sciences. Database: The Journal of Biological Databases and Curation, baw118. PMID: 27538578. (Oxford)

  18. Ahmed, Z., Bolisetty, M., Saman, Z., Anguiano, E., Ucar, D. (2016). MAV-seq: An interactive platform for the Management, Analysis, and Visualization of Sequence Data. Human Genomics, & in proceedings of the Human Genome Meeting (HGM), by the Human Genome Organisation (HUGO), USA, 2016.  PMID: 27294413. (BMC, Springer Nature, Human Genome Organization)

  19. Ahmed, Z., Saman, Z., Dandekar, T. (2015). Butterfly: A Paradigm towards Stable Bio & Neuro Informatics Tools Development. Frontiers in Neuroscience, Frontiers Publishers & INCF.

  20. Ahmed, Z., Saman, Z., Dandekar, T. (2015). GenomeVX: Bioinformatics Solution towards Understanding the Genome-Wide Comparative Analyses of Different Human Populations. Frontiers in Neuroscience, Frontiers Publishers & in the proceedings of the Neuroinformatics Congress (INCF). 

  21. Ahmed, Z., Michel, M., Saman, Z., Dandekar, T., Mueller, M. J., Fekete, A. (2015). Lipid-Pro: A Bioinformatics Tool for Rapid Identification of Lipids in Pre-processed DIA Data. Frontiers in Neuroscience, Frontiers Publishers & INCF.

  22. Ahmed, Z., Michel, M., Saman, Z., Dandekar, T., Mueller, M., & Fekete, A. (2015). Lipid-Pro: A computational lipid identification solution for untargeted lipidomics on data-independent acquisition tan-dem mass spectrometry platforms. Bioinformatics. 31, 1150-1153. PMID: 25433698. (Oxford)

  23. Ahmed, Z., Zeeshan, S., Fleischmann, P., Rössler, W., & Dandekar, T. (2014). Ant-App-DB: a smart solution for monitoring arthropods activities, experimental data management and solar calculations without GPS in behavioral field studies. F1000Research, 3, 311. PMID: 25977753.

  24. Ahmed, Z., Saman, Z., Huber, C., Hensel, M., Schomburg, D., Münch, R., Eylert, E., Eisenreich. W, & Dandekar, T*. (2014). Isotopo Database and Tool for Facile Analysis and Management of Mass Isotopomer Data. Database: The Journal of Biological Databases and Curation. 2014. PMID: 25204646. (Oxford)

  25. Ahmed, Z. (2014). Ant-App-DB: Smart Phone Application for Data Management and Solar Estimations during Behavioural Research on the Insects. Frontiers in Neuroinformatics, Frontiers Publishers & in the proceedings of the Neuroinformatics Congress (INCF). 

  26. Ahmed, Z., Saman, Z. (2014). Cultivating Software Solutions Development in the Scientific Academia. Recent Patents on Computer Science, 13, 54-66 .

  27. Ahmed, Z. (2014). Design & Implementation of an Automation System based on the Desktop and Mobile Technologies. International Journal of Sensors, Wireless Communications and Control. 4:1, 20-31.

  28. Ahmed, Z., Zeeshan, S., & Dandekar, T. (2014). Developing sustainable software solutions for bioinformatics by the ” Butterfly” paradigm. F1000Research, 3, 71. PMID: 25383181.

  29. Dandekar, T., Fieselmann, A., Saman, M., & Ahmed, Z. (2014). Software Applications toward Quantitative Metabolic Flux Analysis and Visualization. Briefings in Bioinformatics. 15, 91-107. PMID: 23142828. (Oxford)

  30. Ahmed, Z., Helfrich-Förster, C. (2013). DroLIGHT-2: Real Time Embedded and Data Management System for Synchronizing Circadian Clock to the Light-Dark Cycles. Recent Patents on Computer Science. 6(3), 191-205.

  31. Ahmed, Z., Helfrich-Förster, C. (2013). DroLIGHT: Real Time Embedded System towards Endogenous Clock Synchronization of Drosophila. Frontiers in Neuroinformatics, Frontiers Publishers & in the proceedings of the Neuroinformatics Congress (INCF).

  32. Ahmed, Z., Helfrich-Förster, C., Dandekar, T. Integrating Formal UML Designs and HCI Patterns with Spiral SDLC in DroLIGHT Implementation. Recent Patents on Computer Science. 6(2), 85-98.

  33. Ahmed, Z., Saman, Z., Huber, C., Hensel, M., Schomburg, D., Münch, R., Eisenreich. W, & Dandekar, T*. (2013). Software LS-MIDA for efficient Mass Isotopomer Distribution Analysis. BMC Bioinformatics. 14: 218. PMID: 23837681. (BMC, Springer Nature)

  34. Ahmed, Z., Saman, M., Dandekar, T. (2012). Computational Feature Performance and DSA Evaluation of Applications towards MFA. Recent Patents on Computer Science. 5 (3), 165-176. 

  35. Ahmed, Z. (2009). Proposing Semantic Oriented Agent and Knowledge base Product Data Management. Information Management and Computer Security Journal, 17(5), 360-371. (Emerald Publishers)

Conference Articles

  1.  Nandwana S, Ahmed Z. Integrating Clinical and Genomic Data for Precision Medicine. Biological and Biomedical Engineering (BioEECS), IEEE MIT Undergraduate Research Technology Conference, MA, USA, 2021.

  2. Ahmed Z, Renart EG, Zeeshan S, and Dong XQ. Advancing clinical genomics and precision medicine with GVViZ. NJ ACTS Translational Medicine and Science Symposium, NJ, USA, 2021.

  3. Ahmed Z. Investigating clinical significance of known immunity genes, implicated diseases, progression, and their relationship with the COVID-19. NJ ACTS Translational Medicine and Science Symposium, NJ, USA, 2021.

  4. Ahmed Z, Renart EG, Zeeshan S, and Dong X. Advancing Knowledge-based Translational Medicine with GVViZ: A Bioinformatics Platform for Variable Gene-Disease Annotation, Visualization, and Expression Analysis. 29th Conference on Intelligent Systems for Molecular Biology (ISMB), and 20th European Conference on Computational Biology (ECCB), USA, 2021.

  5. Renart EG, Zeeshan S, Dong XQ, and Ahmed Z. Human gene-variant discovery, annotation, prediction, and genotyping with JWES. BOSC: Bioinformatics Open-Source Conference. 29th Conference on Intelligent Systems for Molecular Biology (ISMB), and 20th European Conference on Computational Biology (ECCB), USA, 2021.

  6. Ahmed Z, Zeeshan S, Dong XQ. Human Gene and Disease Associations for Clinical-Genomics and Precision Medicine Research to Investigate COVID-19. 28th Conference on Intelligent Systems for Molecular Biology (ISMB), USA, 2020.

  7. Ahmed Z, Saman Z, Liang BT. PAS-Code: iOS App with Mobile Access to the International Classified Disease and Drug Databases for Health Informatics & Precision Medicine. Health Informatics and Data Science, IEEE International Conference on Bioinformatics and Biomedicine, San Diego, CA, USA, 2019.

  8. Ahmed Z, Saman Z, Liang BT. PAS-SNP: iOS App with GWAS SNP-Disease Database for Personalized Genomics Research. Data mining from genomic variants and its application to genome-wide analysis, IEEE International Conference on Bioinformatics and Biomedicine, San Diego, CA, USA, 2019.

  9. Saman Z, Ahmed Z. PAS-MUT with Somatic Mutations in Cancer and Classified Diseases for Clinical-Genomics Research. 10th International Workshop on Biomedical and Health Informatics, IEEE International Conference on Bioinformatics and Biomedicine, San Diego, CA, USA, 2019.

  10. Ahmed Z, Liang BT. Systematically Dealing Practical Issues Associated to Healthcare Data Analytics. Future of Information and Communications Conference (FICC), San Francisco, CA, USA, 2019.

  11. Ahmed Z. Pranulis J, Saman Z, Ngan CY. Bioinformatics Tools for PacBio Sequenced Amplicon Data Pre-Processing and Target Sequence Extraction. Future of Information and Communications Conference (FICC), San Francisco, CA, USA, 2019.

  12. Asamoah S, and Ahmed Z. Smart mobile systems development for monitoring and helping patients suffering with critical diseases. 10th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, USA, 2019.

  13. Neuberger A, Ahmed Z, Dandekar T. IntelliEppi: Intelligent reaction monitoring and holistic data management system for the molecular biology lab. Future of Information and Communications Conference (FICC), San Francisco, CA, USA 2019. [ZA, Joint First, Equally Contributing Author]

  14. Ahmed Z, Liang BT. PROMIS-Med: Precise and Reproducible OMICS-Data Management and Integrative System for Precision Medicine. 26th Conference on Intelligent Systems for Molecular Biology (ISMB), TransMed, Chicago USA, 2018.

  15. Ahmed Z, Dandekar T, Mueller M, Fekete A. Lipid-Pro: A Bioinformatics Tool towards Lipid Identification. F1000Research 4:968, & & in the proceedings of 11th International Conference of the Metabolomics Society, University of California, San Francisco, USA, 2015.

  16. Ahmed Z, Saman M, Eisenreich W., Dandekar T. Isotopo towards Quantitative Mass Isotopomers Distribution Analysis using Spectral Data. F1000Research 4:1422, & in the proceedings of 9th Symposium on Practical Applications of Mass Spectrometry in the Biotechnology Industry, USA, 2012.

  17. Ahmed Z, Ina T. Integration of Agile Ontology Mapping towards NLP Search in I-SOAS. In proceedings of 6th, I*Proms Virtual Conference on Network of Excellence on Innovative Production Machines and Systems, Cardiff University, UK, 15-26 November 2010.

  18. Ahmed Z, Popov V. Integration of Flexible RIA Based GUI in I-SOAS. In proceedings of 6th, I*Proms Virtual Conference on Network of Excellence on Innovative Production Machines and Systems, Cardiff University, UK, 15-26 November 2010.

  19. Ahmed Z. Intelligent - Semantic Oriented Agent Based Search (I-SOAS). In the proceedings of ACM Doctoral Symposium at the 6th ACM International Conference on Frontiers of Information Technology, Special Interest Group on Artificial Intelligence (ACM-SIGART), No. 55, 16-18 Dec. 2009.

  20. Ahmed Z. Intelligent Human Machine Interface Design for Advanced Product Life Cycle Management Systems. In the proceedings of 6th ACM International Conference on Frontiers of Information Technology, Special Interest Group on Artificial Intelligence (ACM-SIGART), No. 49, 16-18 Dec 2009.

  21. Ahmed Z, Sudhir G. Removal of Communication Gap. In the proceedings of 5th, I*Proms Virtual Conference on Network of Excellence on Innovative Production Machines and Systems, Cardiff University, UK, 6-17 July 2009.

  22. Ahmed Z. I-SOAS Data Repository for Advanced Product Data Management. In the proceedings of IADIS European Conference Data Mining, Multi Conference on Computer Science and Information Systems (MCCSIS’ 2009), P177-8, Portugal, 18-20 June 2009.

  23. Ahmed Z, Gerhard D. Design Implementation of I-SOAS IPM for Advanced Product Data Management. In the proceedings of the 2nd IEEE International Conference on Computer, Control & Communication, ISBN: 978-1-4244-3313-1, May 17-18 February 2009. [Conference Paper Award]

  24. Ahmed Z, Gerhard D. Design Implementation of Semantic Oriented Agent and Knowledge based approach for Intelligent Human Machine Data Manipulation. In the proceedings of 4th, I*Proms Virtual Conference on Network of Excellence on Innovative Production Machines and Systems, Cardiff University, UK, 1-14 July 2008.

  25. Ahmed Z, Gerhard D. Semantic Oriented Agent based Approach towards Engineering Data Management, Web Information Retrieval and User System Communication Problems. In the proceedings of 3rd International Conference for Internet Technology and Secured Transactions, IEEE - CST, Dublin Institute of Technology, Dublin Ireland, June 23-28, 2008.

  26. Ahmed Z. Statistical Semantic Modeling of Preprocessed Source Code to Identify, Measure and Visualize the Complexities in Software Product Line Applications. In Proceedings 4th Int Statistical Conference, ID 19, Vol. 15, 1-12, 9-11 May 2008.

  27. Ahmed Z, Sudhir G., Hans K. Design Artifact's, Design Principles, Problems, Goals and Importance. In Proceedings 4th International Statistical Conference, Paper ID 42, Vol. 15, 57-68, 9-11 May 2008.

  28. Ahmed Z. Statistical Trading Using Target Oriented Trading Agent. In Proceedings 4th International Statistical Conference, Paper ID 20, Vol. 16, 355-358, 9-11 May 2008.

  29. Ahmed Z. Software product line-based approach towards the software product quality improvement. The 7th International Conference on Software Methodologies, Tools and Techniques, 2008.

  30. Ahmed Z, Gerhard D. Role of Ontology in Semantic Web Development. In the proceedings of First International Workshop on Cultural Heritage on the Semantic Web in conjunction with the 6th International Semantic Web Conference and the 2nd Asian Semantic Web Conference 2007, (ISWC + ASWC 2007), P 119, 12-15 November 2007.

  31. Ahmed Z, Gerhard D. An Agent based Approach towards Metadata Extraction, Modeling and Information Retrieval over the Web. In the proceedings of First International Workshop on Cultural Heritage on the Semantic Web in conjunction with the 6th International Semantic Web Conference and the 2nd Asian Semantic Web Conference 2007, (ISWC + ASWC 2007), P 117, 12-15 November 2007.

  32. Ahmed Z, Gerhard D. Contributions of PDM Systems in Organizational Technical Data Management. In the proceedings of The First IEEE International Conference on Computer, Control & Communication, 12-13 November 2007.

  33. Ahmed Z. Measurement Analysis and Fault Proneness Indication in Product Line Applications (PLA). In the 6th International Conference on New Software Methodologies, Tools, and Techniques (SOMET-07), Italy, 7-9 November, 2007.

  34. Ahmed Z, Gerhard D. Personal Assistant towards Semantic Information Retrieval. In the proceedings of Fifth International Workshop on Ontologies and Semantic Web for E-Learning, 13th International Conference on Artificial Intelligence in Education (AIED 2007), P115, 9-13 July 2007.

Patents and Preprints

  1. Neuberger A, Ahmed Z, Dandekar T. IntelliEppi: Intelligent reaction monitoring and holistic data management for the molecular biology lab. BioRxiv, 2017. [ZA, Joint First, Equally Contributing Author] 

  2. Ahmed Z, Ucar D. A standalone software platform for the management and pre-processing of ATAC-seq samples. PeerJ, Pre-Prints, 5:e2942v1, 2017.

  3. Ahmed Z. Project Report: Intelligent Semantic Oriented Agent based Search (I-SOAS). PeerJ, Pre-Prints, Vol. 3, No. E1518v1, 2015.

  4. Ahmed Z. Essential design modeling for scientific software development. PeerJ, Pre-Prints, Vol. 3, No. E1776, 2015.

  5. Neuberger A,  Ahmed Z, T. Dandekar*. A system for non-contact monitoring of reaction vessels with electronic bearing support, preparation of suitable vessels and monitoring technology. The German Patent and Trademark Office, 23 October 2014. [Joint First, Equally Contributing Author]

Talks

  1. Ahmed Z. Investigating Susceptibility of Known Immunity Genes, Implicated Diseases, and the Relationship with COVID-19. Brown Bag Seminar, Institute for Health, Health Care Policy and Aging Research, Rutgers University, NJ, USA, 2021.

  2. Ahmed Z. Human Gene and Disease Associations for Clinical-Genomics and Precision Medicine Research to Investigate COVID-19, at the 28th International Conference on Intelligent Systems for Molecular Biology (ISMB-2020), 2020.

  3. Ahmed Z. 100 Years of evolving gene-disease complexities and scientific debutants in precision medicine. Pathobiology and Veterinary Science, College of Agriculture, Health and Natural Resources, University of Connecticut, Storrs, USA, 2019.

  4. Ahmed Z. PAS-SNP: iOS App with GWAS SNP-Disease Database for Personalized Genomics Research. Data mining from genomic variants and its application to genome-wide analysis, IEEE International Conference on Bioinformatics and Biomedicine, San Diego CA, USA, 2019.

  5. Ahmed Z. PAS-Code: iOS App with Mobile Access to the International Classified Disease and Drug Databases for Health Informatics. Health Informatics and Data Science, IEEE International Conference on Bioinformatics and Biomedicine, San Diego CA, USA, 2019. 

  6. Ahmed Z. PAS-MUT with Somatic Mutations in Cancer and Classified Diseases for Clinical-Genomics Research. 10th International Workshop on Biomedical and Health Informatics, IEEE International Conference on Bioinformatics and Biomedicine, San Diego CA, USA, 2019. 

  7. Ahmed Z. Multi-functional Smart and Intelligent Solutions Design & Development for Precision Medicine Initiative. Annual Retreat, Genetics and Genome Sciences, School of Medicine, UConn Health, Farmington CT, USA, 2019.

  8. Ahmed Z. Multi-functional High-throughput & Intelligent Systems Development for better Personalized and Population Medicine. Rutgers Biomedical and Health Sciences, Rutgers University, The State University of New Jersey, NJ, USA, 2019

  9. Ahmed Z. Assimilating Clinical Data with Genetic Signatures for Personalized Treatment and Predictive Diagnostic in Precision Medicine. Marshfield Clinic Research Institute, Marshfield Clinic Health System, Marshfield WI, USA, 2019.

  10. Ahmed Z. Precision Medicine Imitative & Practice transformation at UConn Health. USA Alumni Wuerzburg - Chapter, German Industry and Trade, Washington, DC, USA, 2019.

  11. Ahmed Z. iOS app suite with human gene-SNP-disease-drug relationships for supporting research and operations in clinics, genomics, pathology, epidemiology and precision medicine. 1st Annual UCHC Global Health Symposium, School of Medicine, UConn Health, Farmington CT, USA, 2019.

  12. Ahmed Z. Assimilating Healthcare Records and Genetic Signatures for Personalized Treatment and Predictive Diagnostic in Precision Medicine. University of Nebraska, University of Nebraska Medical School, Omaha, NE, USA, 2019.

  13. Ahmed Z. Integrative Healthcare and Genomics Data Analysis for Personalized Treatment and Predictive Diagnostic in Precision Medicine. Lewis Katz School of Medicine, Temple University, Philadelphia, PA, USA, 2019. 

  14. Ahmed Z. We need PROMIS-Med: Perspective to Innovation in Precision Medicine. Genomic Diagnostics & Bioinformatics, School of Medicine, The University of Alabama, Birmingham, AL, USA, 2019. 

  15. Ahmed Z. Systematically Dealing Practical Issues Associated to Healthcare Data Analytics. Future of Information and Communications Conference, Venue: The Park Central, San Francisco, CA, USA, 2019.

  16. Ahmed Z. Bioinformatics Tools for PacBio Sequenced Amplicon Data Pre-Processing and Target Sequence Extraction. Future of Information and Communications Conference, San Francisco, CA, USA, 2019.

  17. Ahmed Z. IntelliEppi: Intelligent reaction monitoring and holistic data management system for the molecular biology lab. Future of Information and Communications Conference, San Francisco, CA, USA, 2019.

  18. Ahmed Z. Role of Bioinformatics in Precision Medicine at UConn Health. Neuroscience Seminar Series, Neuroscience Department, School of Medicine, Low Learning Center, UConn Health, USA, 2019.

  19. Ahmed Z. Innovating PROMIS-Med: Product-Line Platform for Precision Medicine. The Precision Medicine World Conference (PMWC), Santa Clara Convention Center (Silicon Valley), San Jose CA, USA, 2019.

  20. Ahmed Z. PROMIS-Med: Healthcare Data Analytics and Gene Discovery Planet for Precision Medicine. Children Hospital of Philadelphia (CHOP), Perelman School of Medicine, University of Pennsylvania (UPenn), Philadelphia PA, USA, 2018.

  21. Ahmed Z. Integrative Genomics and Clinical Data Analysis for Precision Medicine. Networking Workshop, Institute for Systems Genomics (ISG), Engineering and Science, University of Connecticut, Storrs CT, USA, 2018.

  22. Ahmed Z. Integrative & Analytic Big Data Management in Precision Medicine. Comparative Pathology Seminar Series, Pathobiology and Veterinary Science, College of Agriculture, Health and Natural Resources, University of Connecticut (UConn), Storrs, USA, 2018.

  23. Ahmed Z. Precise and Reproducible OMICS-Data Management and Integrative System. Annual Retreat, Genetics and Genome Sciences, School of Medicine, UConn Health, Portland, USA, 2018.

  24. Ahmed Z. PROMIS-Med: Precise and Reproducible OMICS-Data Management and Integrative System for Precision Medicine. 26th Conference on Intelligent Systems for Molecular Biology (ISMB), Chicago USA, 2018.

  25. Ahmed Z. Contributions of Computational Sciences in Life Sciences: A Venturous Journey. Mathematics and Computational Science, University of South Carolina, USA, 2018.

  26. Ahmed Z. Dealing practical issues associated to the clinical and genomic data integration for precision medicine. Genetics and Genome Sciences, University of Connecticut, and The Jackson Laboratory for Genomics Medicine, CT, USA, 2017.

  27. Ahmed Z. Dealing practical issues associated to the clinical and high throughput genomic data integration for precision medicine. University of Texas Health Science Center, Houston, TX, USA, 2017.

  28. Ahmed Z. Dealing practical issues associated to the clinical and genomic data integration for precision medicine. Dean’s Retreat, School of Medicine, University of Connecticut, Farmington, CT, USA, 2017.

  29. Ahmed Z. MAV-Clic: Management, Analysis, and Visualization of Clinical Data. University of Massachusetts Medical School, Center for Health Policy and Research, Shrewsbury, MA, USA, 2017.

  30. Ahmed Z. MAV-seq: Management, Analysis, and Visualization of Sequence Data. The Institute for Systems Genomics (ISG), University of Connecticut, Farmington, CT, USA, 2017.

  31. Ahmed Z. MAV-seq: Management, Analysis, and Visualization of Sequence Data. The Jackson Laboratory for Genomics Medicine, Genome Research Club, Farmington, CT, USA, 2017.

  32. Ahmed Z. MAV-seq: An interactive platform for the Management, Analysis, and Visualization of Sequence Data. Human Genome Meeting (HGM), Translational Genomics, by the Human Genome Organisation (HUGO), Houston, TX, USA, 2016.

  33. Ahmed Z. MAV-seq: Towards the efficient Management, Analysis, and Visualization of NGS Data. University of Connecticut (UConn) Health Center, School of Medicine, Center of Quantitative Medicine, Farmington, CT, USA, 2016.

  34. Ahmed Z. Developing sustainable software solutions for bioinformatics by the “Butterfly” paradigm. The Jackson Laboratory for Genomic Medicine,  Farmington, CT, USA, 2015.

  35. Ahmed Z. Scientific software solutions development using “Butterfly” paradigm. Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Greater Boston, MA, USA, 2015.

  36. Ahmed Z. New Scientific software solutions: DroLIGHT, Ant-App-DB and Lipid-Pro. German Research Foundation (DFG) SFB-CRC-1047 Project Annual Meeting, Tagungshaus Schoenenberg, Tauberbischofsheim, Germany, 2014.

  37. Ahmed Z. Intellieppi, A system for non-contact monitoring of reaction vessels: Software Design & Implementation. Eppendorf, Hamburg, Germany, 2013.

  38. Ahmed Z. Bioinformatics Software for Metabolic and Health Care Data Management. Department of Bioinformatics, Biocenter, Faculty of Biology, University of Wuerzburg, Wuerzburg, Germany, 2012.

  39. Ahmed Z. Demonstration: Software for Metabolic Modeling. German Research Foundation (DFG) SPP 1316, Status Seminar, Host Adapted Metabolism of Bacterial Pathogens, Obergurgl University Center, Obergurgl, Austria, 2012.

  40. Ahmed Z. Project Z1:  Bioinformatic tools and OMICS databases. German Research Foundation (DFG) SFB/Transregio 34 Official Meeting at The Institute for Molecular Infection Biology (IMIB), University of Wuerzburg Germany, 2011.

  41. Ahmed Z. Metabolism of Bacterial Infections- LS-MIDA and Isotopo. German Research Foundation (DFG) SFB-1316 Meeting, Host Adapted Metabolism of Bacteria Pathogen, Technical University of Munich, Munich, Germany, 2011.

  42. Ahmed Z. LS-MIDA and Isotopo. German Research Foundation (DFG) SPP 1316, Review Meeting, European Institute for Conferences and Professional Training, Gustav-Stresemann-Institut (GSI), Bonn-Bad Godesberg Germany, 2011.

  43. Ahmed Z. Demonstration of Software for Biological Experimental Data Analysis (SBEDA). German Research Foundation (DFG) SFB-1316 Meeting, Institute of Biology & Chemistry, University Osnabrueck, Osnabrueck, Germany, 2010.

  44. Ahmed Z. SW, NLP and IUI using Intelligent Semantic Oriented Agent based Search (I-SOAS). Doctoral Symposium, Semantics Week, University of Amsterdam, Amsterdam, Netherlands, 2009.

  45. Ahmed Z. Integration of variants handling in M-system NT. Department of Computer Science, Blekinge Institute of Technology, University of Blekinge, Sweden, 2006.